can filipino passport holder apply for a 3day visa on arival comming from macau to zhuhai?

Yes but Filipinos have a high risk of being refused.

Yes, the citizen of the Philippines can apply for a 3 day Zhuhai visa at the border crossings, however I have to inform you that the rate of success of the citizens of the Philippines is not exactly the best or in other words, you should prepare yourself to be refused the visa issuing. You are definitely allowed to proceed and to apply regardless this information and in that process I wish you the best of luck. By the way, the most convenient time to arrive at the visa office at the border crossing is in the morning hours.